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File Response of fish assemblages to declining acidic deposition in Adirondack Mountain lakes, 1984-2012
Adverse effects of acidic deposition on the chemistry and fish communities were evident in Adirondack Mountain lakes during the 1980s and 1990s. Fish assemblages and water chemistry in 43 Adirondack Long-Term Monitoring (ALTM) lakes were sampled by the Adirondack Lakes Survey Corporation and the New York State Department of Environmental Conservation during three periods (1984-87, 1994-2005, and 2008-12) to document regional impacts and potential biological recovery associated with the 1990 amendments to the 1963 Clean Air Act (CAA). We assessed standardized data from 43 lakes sampled during the three periods to quantify the response of fish-community richness, total fish abundance, and brook trout (Salvelinus fontinalis) abundance to declining acidity that resulted from changes in U.S. airquality management between 1984 and 2012. During the 28-year period, mean acid neutralizing capacity (ANC) increased significantly from 3 to 30 meq/L and mean inorganic monomeric Al concentrations decreased significantly from 2.22 to 0.66 mmol/L, yet mean species richness, all species or total catch per net night (CPNN), and brook trout CPNN did not change significantly in the 43 lakes. Regression analyses indicate that fishery metrics were not directly related to the degree of chemical recovery and that brook trout CPNN may actually have declined with increasing ANC. While the richness of fish communities increased with increasing ANC as anticipated in several Adirondack lakes, observed improvements in water quality associated with the CAA have generally failed to produce detectable shifts in fish assemblages within a large number of ALTM lakes. Additional time may simply be needed for biological recovery to progress, or else more proactive efforts may be necessary to restore natural fish assemblages in Adirondack lakes in which water chemistry is steadily recovering from acidification.
Located in Science and Data / Brook Trout Related Publications
File A regional neural network ensemble for predicting mean daily river water temperature
Water temperature is a fundamental property of river habitat and often a key aspect of river resource management, but measurements to characterize thermal regimes are not available for most streams and rivers. As such, we developed an artificial neural network (ANN) ensemble model to predict mean daily water temperature in 197,402 individual stream reaches during the warm season (May–October) throughout the native range of brook trout Salvelinus fontinalis in the eastern U.S. We compared four models with different groups of predictors to determine how well water temperature could be predicted by climatic, landform, and land cover attributes, and used the median prediction from an ensemble of 100 ANNs as our final prediction for each model. The final model included air temperature, landform attributes and forested land cover and predicted mean daily water temperatures with moderate accuracy as determined by root mean squared error (RMSE) at 886 training sites with data from 1980 to 2009 (RMSE = 1.91 C). Based on validation at 96 sites (RMSE = 1.82) and separately for data from 2010 (RMSE = 1.93), a year with relatively warmer conditions, the model was able to generalize to new stream reaches and years. The most important predictors were mean daily air temperature, prior 7 day mean air temperature, and network catchment area according to sensitivity analyses. Forest land cover at both riparian and catchment extents had relatively weak but clear negative effects. Predicted daily water temperature averaged for the month of July matched expected spatial trends with cooler temperatures in headwaters and at higher elevations and latitudes. Our ANN ensemble is unique in predicting daily temperatures throughout a large region, while other regional efforts have predicted at relatively coarse time steps. The model may prove a useful tool for predicting water temperatures in sampled and unsampled rivers under current conditions and future projections of climate and land use changes, thereby providing information that is valuable to management of river ecosystems and biota such as brook trout.
Located in Science and Data / Brook Trout Related Publications
File ECMAScript program Predicting Brook Trout Occurrence in Stream Reaches throughout their Native Range in the Eastern United States
The Brook Trout Salvelinus fontinalis is an important species of conservation concern in the eastern USA. We developed a model to predict Brook Trout population status within individual stream reaches throughout the species’ native range in the eastern USA. We utilized hierarchical logistic regression with Bayesian estimation to predict Brook Trout occurrence probability, and we allowed slopes and intercepts to vary among ecological drainage units (EDUs). Model performance was similar for 7,327 training samples and 1,832 validation samples based on the area under the receiver operating curve (»0.78) and Cohen’s kappa statistic (0.44). Predicted water temperature had a strong negative effect on Brook Trout occurrence probability at the stream reach scale and was also negatively associated with the EDU average probability of Brook Trout occurrence (i.e., EDU-specific intercepts). The effect of soil permeability was positive but decreased as EDU mean soil permeability increased. Brook Trout were less likely to occur in stream reaches surrounded by agricultural or developed land cover, and an interaction suggested that agricultural land cover also resulted in an increased sensitivity to water temperature. Our model provides a further understanding of how Brook Trout are shaped by habitat characteristics in the region and yields maps of stream-reach-scale predictions, which together can be used to support ongoing conservation and management efforts. These decision support tools can be used to identify the extent of potentially suitable habitat, estimate historic habitat losses, and prioritize conservation efforts by selecting suitable stream reaches for a given action. Future work could extend the model to account for additional landscape or habitat characteristics, include biotic interactions, or estimate potential Brook Trout responses to climate and land use changes.
Located in Science and Data / Brook Trout Related Publications
File The temperature–productivity squeeze: constraints on brook trout growth along an Appalachian river continuum
We tested the hypothesis that brook trout growth rates are controlled by a complex interaction of food availability, water temperature, and competitor density. We quantified trout diet, growth, and consumption in small headwater tributaries characterized as cold with low food and high trout density, larger tributaries characterized as cold with moderate food and moderate trout density, and large main stems characterized as warm with high food and low trout density. Brook trout consumption was highest in the main stem where diets shifted from insects in headwaters to fishes and crayfish in larger streams. Despite highwater temperatures, trout growth rates also were consistently highest in the main stem, likely due to competitively dominant trout monopolizing thermal refugia. Temporal changes in trout density had a direct negative effect on brook trout growth rates. Our results suggest that competition for food constrains brook trout growth in small streams, but access to thermal refugia in productive main stem habitats enables dominant trout to supplement growth at a watershed scale. Brook trout conservation in this region should seek to relieve the ‘‘temperature–productivity squeeze,’’ whereby brook trout productivity is constrained by access to habitats that provide both suitable water temperature and sufficient prey.
Located in Science and Data / Brook Trout Related Publications
File Brook Trout Movement in Response to Temperature, Flow, and Thermal Refugia within a Complex Appalachian Riverscape
We quantified movements of brook trout Salvelinus fontinalis and brown trout Salmo trutta in a complex riverscape characterized by a large, open-canopy main stem and a small, closed-canopy tributary in easternWest Virginia, USA. Our objectives were to quantify the overall rate of trout movement and relate movement behaviors to variation in streamflow, water temperature, and access to coldwater refugia. The study area experienced extremely high seasonal, yearly, and among-stream variability in water temperature and flow. The relative mobility of brook trout within the upper Shavers Fork watershed varied significantly depending on whether individuals resided within the larger main stem or the smaller tributary. The movement rate of trout inhabiting the main stem during summer months (50 m/d) was an order of magnitude higher than that of tributary fish (2 m/d). Movement rates of main-stem-resident brook trout during summer were correlated with the maximum water temperature experienced by the fish and with the fish’s initial distance from a known coldwater source. For main-stem trout, use of microhabitats closer to cover was higher during extremely warm periods than during cooler periods; use of microhabitats closer to cover during warm periods was also greater for main-stem trout than for tributary inhabitants. Main-stem-resident trout were never observed in water exceeding 19.5◦C. Our study provides some of the first data on brook trout movements in a large Appalachian river system and underscores the importance of managing trout fisheries in a riverscape context. Brook trout conservation in this region will depend on restoration and protection of coldwater refugia in larger river main stems as well as removal of barriers to trout movement near tributary and main-stem confluences.
Located in Science and Data / Brook Trout Related Publications
File Linking movement and reproductive history of brook trout to assess habitat connectivity in a heterogeneous stream network
1. Defining functional connectivity between habitats in spatially heterogeneous landscapes is a particular challenge for small-bodied aquatic species. Traditional approaches (e.g. mark–recapture studies) preclude an assessment of animal movement over the life cycle (birth to reproduction), and movement of individuals may not represent the degree of gene movement for fecund species. 2. We investigated the degree of habitat connectivity (defined as the exchange of individuals and genes between mainstem and tributary habitats) in a stream brook trout (Salvelinus fontinalis) population using mark–recapture [passive integrated transponder (PIT) tags], stationary PIT-tag antennae and genetic pedigree data collected over 4 years (3425 marked individuals). We hypothesised that: (i) a combination of these data would reveal higher estimates of animal movement over the life cycle (within a generation), relative to more temporally confined approaches, and (ii) movement estimates of individuals within a generation would differ from between-generation movement of genes because of spatial variation in reproductive success associated with high fecundity of this species. 3. Over half of PIT-tagged fish (juveniles and adults) were recaptured within 20 m during periodic sampling, indicating restricted movement. However, continuous monitoring with stationary PIT-tag antennae revealed distinct peaks in trout movements in June and October–November, and sibship data inferred post-emergence movements of young-of-year trout that were too small to be tagged physically. A combination of these methods showed that a moderate portion of individuals (28–33%) moved between mainstem and tributary habitats over their life cycle. 4. Patterns of reproductive success varied spatially and temporally. The importance of tributaries as spawning habitat was discovered by accounting for reproductive history. When individuals born in the mainstem reproduced successfully, over 50% of their surviving offspring were inferred to have been born in tributaries. This high rate of gene movement to tributaries was cryptic, and it would have been missed by estimates based only on movement of individuals. 5. This study highlighted the importance of characterising animal movement over the life cycle for inferring habitat connectivity accurately. Such movements of individuals can contribute to substantial gene movements in a fecund species characterised by high variation in reproductive success.
Located in Science and Data / Brook Trout Related Publications
File Estimating size-specific brook trout abundance in continuously sampled headwater streams using Bayesian mixed models with zero inflation and overdispersion
We examined habitat factors related to reach-scale brook trout Salvelinus fontinalis counts of four size classes in two headwater stream networks within two contrasting summers in Connecticut, USA. Two study stream networks (7.7 and 4.4 km) were surveyed in a spatially continuous manner in their entirety, and a set of Bayesian generalised linear mixed models was compared. Trout abundance was best described by a zero-inflated overdispersed Poisson model. The effect of habitat covariates was not always consistent among size classes and years. There were nonlinear relationships between trout counts and stream temperature in both years. Colder reaches harboured higher trout counts in the warmer summer of 2008, but this pattern was not observed in the cooler and very wet summer of 2009. Amount of pool habitat was nearly consistently important across size classes and years, and counts of the largest size class were correlated positively with maximum depth and negatively with stream gradient. Spatial mapping of trout distributions showed that reaches with high trout counts may differ among size classes, particularly between the smallest and largest size classes, suggesting that movement may allow the largest trout to exploit spatially patchy habitats in these small headwaters.
Located in Science and Data / Brook Trout Related Publications
File Impacts of Exotic Rainbow Trout on Habitat Use by Native Juvenile Salmonid Species at an Early Invasive Stage
The detrimental impact of introduced Rainbow Trout Oncorhynchus mykiss on native communities has been well documented around the world. Previous studies have focused on streams where the invasion has been successful and the species is fully established. In eastern Quebec, the invasion of Rainbow Trout is an ongoing process and, for now, there are few established populations. The presence of two native salmonids in these rivers, Atlantic Salmon Salmo salar and Brook Trout Salvelinus fontinalis, implies a risk of competition for habitat, despite the relatively low density of the Rainbow Trout populations, as all three species are known to use similar resources. In order to evaluate the strength of the interaction between the invading fish and the native species, we sampled nine rivers (five with Rainbow Trout and four free of Rainbow Trout) and characterized the habitat used by the three salmonids at the juvenile stage. River-scale analysis revealed that in invaded rivers, Rainbow Trout were associated with habitats characterized by closer proximity to the shoreline and by increasing shoreline cover. Estimates of habitat niche overlap integrating depth, water velocity, and substrate size revealed that niche overlap between Brook Trout and Atlantic Salmon significantly increased in the presence of Rainbow Trout. Furthermore, the two indigenous species preferred full cover in the absence of Rainbow Trout but in the presence of Rainbow Trout, which also preferred full cover, the indigenous species moved to more open habitats. Rainbow Trout showed a high growth rate, despite a size disadvantage at the beginning of the growing season, as compared with Atlantic Salmon and Brook Trout. It thus appears that even at an early stage of invasion, when its density is still low, Rainbow Trout significantly impact native salmonids.
Located in Science and Data / Brook Trout Related Publications
File Troff document Geomorphic, Flood, and Groundwater-Flow Characteristics of Bayfield Peninsula Streams, Wisconsin, and Implications for Brook-Trout Habitat
In 2002–03, the U.S. Geological Survey conducted a study of the geomorphic, flood, and groundwater-flow characteristics of five Bayfield Peninsula streams, Wisconsin (Cranberry River, Bark River, Raspberry River, Sioux River, and Whittlesey Creek) to determine the physical limitations for brook-trout habitat. The goals of the study were threefold: (1) to describe geomorphic characteristics and processes, (2) to determine how land-cover characteristics affect flood peaks, and (3) to determine how regional groundwater flow patterns affect base flow. The geomorphic characterization consisted of analyses of historical aerial photographs and General Land Office Survey notes, observations from helicopter video footage, surveys of valley cross sections, and coring. Sources of sediment were identified from the helicopter video and field surveys, and past erosion-control techniques were evaluated. Geomorphic processes, such as runoff sediment erosion, transport, and deposition, are driven by channel location within the drainage network, texture of glacial deposits, and proximity to postglacial lake shorelines; these processes have historically increased because of decreases in upland forest cover and channel roughness. Sources of sediment for all studied streams mainly came from bank, terrace, or bluff erosion along main stem reaches and along feeder tributaries that bisect main-stem entrenched valley sides. Bluff, terrace, and bank erosion were the major sources of sediment to Whittlesey Creek and the Sioux River. No active bluff erosion was observed on the Cranberry River or the Bark River but anecdotal information suggests that landslides occasionally happen on the Cranberry River. For the Bark River, sources of sediment were somewhat evenly divided among road crossings (bridges, culverts, and unimproved forest lanes), terrace erosion, bank erosion, and incision along upper main stems and feeder channels along valley sides. Evaluation of past erosion-control techniques indicated that bluffs were stabilized by a combination of artificial hardening and bioengineering of the bluff base and reducing mass wasting of the tops of the bluffs. Flood hydrographs for the Cranberry River were simulated for four land-cover scenarios—late 20th century (1992–93), presettlement (before 1870), peak agriculture (1928), and developed (25 percent urban). Results were compared to previous simulations of flood peaks for Whittlesey Creek and for North Fish Creek (southern adjacent basin to Whittlesey Creek). Even though most uplands are presently forested, flood peaks simulated for 1992–93 were 1.5 to 2 times larger than presettlement flood peaks. The increased flood peaks caused (1) increased incision along upper main stems and tributaries that bisect entrenched valley sides, (2) bluff and terrace erosion along reaches with entrenched valleys, (3) overbank deposition and bar formation in middle and lower main stems, and (4) aggradation in mouth areas. A base-flow survey was conducted and a groundwater-flow model was developed for the Bayfield Peninsula to delineate groundwater contributing areas. A deep aquifer system, which includes thick deposits of sand and the upper part of the bedrock, is recharged through the permeable sands in the center of the peninsula. Base flow is unevenly distributed among the Bayfield streams and depends on the amount of channel incision and the proximity of the channels to the recharge area and coarse outwash deposits. Groundwater contributing areas for the five streams do not coincide with surface-water-contributing areas. About 89 percent of total recharge to the deep aquifer system discharges to Bayfield streams; the remaining 11 percent directly discharges to Lake Superior. Historical land-cover changes have had negligible effects on groundwater-flow from the deep aquifer system. Available brook-trout habitat is dependent on the locations of groundwater upwellings, the sizes of flood peaks, and sediment loads. Management practices that focus on reducing or slowing runoff from upland areas and increasing channel roughness have potential to reduce flood peaks, erosion, and sedimentation and improve brook-trout habitat in all Bayfield Peninsula streams.
Located in Science and Data / Brook Trout Related Publications
File application/x-troff-ms Evaluation of Catch-and-Release Regulations on Brook Trout in Pennsylvania Streams
In 2004, the Pennsylvania Fish and Boat Commission implemented catch-and-release (CR) regulations on headwater stream systems to determine if eliminating angler harvest would result in an increase in the number of adult (≥100 mm) or large (≥175 mm) Brook Trout Salvelinus fontinalis. Under the CR regulations, angling was permitted on a year-round basis, no Brook Trout could be harvested at any time, and there were no tackle restrictions. A before-after–control-impact design was used to evaluate the experimental regulations. Brook Trout populations were monitored in 16 treatment (CR regulations) and 7 control streams (statewide regulations) using backpack electrofishing gear periodically for up to 15 years (from 1990 to 2003 or 2004) before the implementation of the CR regulations and over a 7–8-year period (from 2004 or 2005 to 2011) after implementation. We used Poisson mixed models to evaluate whether electrofishing catch per effort (CPE; catch/100 m2) of adult (≥100 mm) or large (≥175 mm) Brook Trout increased in treatment streams as a result of implementing CR regulations. Brook Trout CPE varied among sites and among years, and there was no significant effect (increase or decrease) of CR regulations on the CPE of adult or large Brook Trout. Results of our evaluation suggest that CR regulations were not effective at improving the CPE of adult or large Brook Trout in Pennsylvania streams. Low angler use, high voluntary catch and release, and slow growth rates in infertile headwater streams are likely the primary reasons for the lack of response.
Located in Science and Data / Brook Trout Related Publications
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